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Biognosys dia data files
Dia Data Files, supplied by Biognosys, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/data+files/analysis+data+dia/pmc13280846-62-0-7
Average 86 stars, based on 1 article reviews

dia data files - by Bioz Stars, 2026-11

86/100 stars

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Article Title: Multi-omics profiling finds synbio milk differs nutritionally from bovine milk and contains 93 uncharacterized fungal metabolites and 236 fungal proteins.
Article Snippet: Proteomics Data Analysis—LCMS files were processed with Spectronaut version 19.8 (Biognosys, Zurich, Switzerland) using DirectDIA analysis mode.

Article Title: Proteomic and phospho-proteomic longitudinal signatures of human skeletal muscle in lung cancer cachexia
Article Snippet: Upon elusion, peptides were 635 injected via a Nanospray Flex ion source and 30-uM steel emitter (Evosep) into a Tribrid 636 Ascend mass spectrometer (Thermo Scientific).

Software:

Article Title: A Nonketotic Hyperglycinemia Mouse Shows Wide‐Ranging Biochemical Consequences of Elevated Glycine, Reduced Folate One‐Carbon Charging, and Serine Deficiency
Article Snippet: After washing, the peptides were eluted and analyzed by reverse phase liquid chromatography and label‐free data‐independent acquisition (DIA) on an OrbiTrap Eclipse Mass Spectrometer (Thermo Fisher Scientific, San Jose, CA) using conditions as previously described [ ]. .. Raw data files were processed on Spectronaut 18.7 software (Biognosys AG, Schlieren, Swtizerland) [ , ], excluding single hit proteins, and identified on the UniProt mouse database (canonical peptides + isoforms, reviewed, 25 346 entries) for label‐free quantification. ..

Article Title: A Nonketotic Hyperglycinemia Mouse Shows Wide-Ranging Biochemical Consequences of Elevated Glycine, Reduced Folate One-Carbon Charging, and Serine Deficiency.
Article Snippet: After washing, the peptides were eluted and analyzed by reverse phase liquid chromatography and label- free data- independent acquisition (DIA) on an OrbiTrap Eclipse Mass Spectrometer (Thermo Fisher Scientific, San Jose, CA) using conditions as previously described [35]. .. Raw data files were processed on Spectronaut 18.7 software (Biognosys AG, Schlieren, Swtizerland) [36, 37], excluding single hit proteins, and identified on the UniProt mouse database (canonical peptides + isoforms, reviewed, 25 346 entries) for label- free quantification. ..

Article Title: Noninvasive early detection and grading of pneumoconiosis via plasma proteomics and machine learning: PRSS3 as a potential biomarker.
Article Snippet: .. Data Analysis All raw files were analyzed via Spectronaut software (Biognosys, version 17.0). (16, 17) A DDA spectral library was constructed using data from the fractionated pooled samples (12 fractions in total). ..

Quantitative Proteomics:

Data-independent acquisition:

Article Title: Deciphering O‑GlcNAc-Dependent Signaling Via Integrated Proteomics and Phosphoproteomics
Article Snippet: .. DIA data files were processed with Spectronaut (Biognosys, v18) using standard settings with slight modifications for the quantification of protein abundances and phosphorylation levels. ..

Phospho-proteomics:

Data-dependent acquisition:

Construct:

Liquid Chromatography with Mass Spectroscopy:

Article Title: Serum proteome of the Egyptian rousette bat (Rousettus aegyptiacus) reveals signatures of immunity, proteostasis, and metabolism.
Article Snippet: .. Data processing with Spectronaut LC-MS files were processed with Spectronaut version 18 (Biognosys, Zurich, Switzerland) using DirectDIA analysis mode. ..

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